Evidence for Evolution        1. Describe the evidence from the fossil record, homology, and comparative embryology        2. Use comparative embryology as evidence evolving species and to demonstrate how the species are related        3. Compare this evidence with that based on protein and DNA analysis

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Fossil Record
     - Darwin predicted that transitional fossils would be found that would show intermediate stages in the fossil record.
     - A bone becomes fossilized when its calcium is replaced by harder minerals.
     - The fossil record of the horse, for example, after the small dog-sized creature of 60 million years ago you find a series of intermediate organisms that lead to the modern horse.
     - The age of fossils can be determined by: 
         > where they were found relative to other fossils
         > the amount of radioactive material in fossil remains.

Homology
     - Homologous (similar) structures in organisms suggest that organisms had a common ancestor.
     - Two organisms with  homologous structures may show DNA nucleotide sequences that are similiar.
     - Structures that have become smaller as the years have gone by (because they are no longer used) are called vestigial.  Examples include small internal leg bones in snakes, the appendix in humans, and hip bones in whales.
     - Homologous structures between 2 species may indicate common evolutionary origin.  For example, the fin of a dolphin has bones similar to a multi-fingered hand ... indicating a common origin with mammals that have "fingers."
     - HOWEVER ... Similar structures may develop in different species through convergent evolution.  An example of this is fins in whales/dolphins and in fish.  They are far apart according to evolution, but have developed the same type of structures.

Comparative Embryology
     - Before Darwin had even thought about evolution, Ernst von Baer theorized (1828) that the closer two species are related, the more similar their development. 
     - Most vertebrate embryos look alike at the beginning of their formation. 
     - A human embryo exhibits gill pouches, a coat of fine fur, and a bony tail for a certain amount of time.
     - For a short while, human (zygotes) look like amphibian and bird (zygotes).  For a little longer, human embryos resemble other mammal embyros.  Human embryos look like monkey/ape embryos the longest, before finally taking on distinctly human features.
     - So, on a cladistic diagram of the evolution of animals, similarities in embyological development are analogous to closeness in evolutionary development.

DNA & Protein Evidence
     - As organisms are more similiar, their amino acid sequences in their proteins are more similar.
     - If species have changed over time, their genes will have changed as well.
     - As organisms are more similiar, their nucleotide sequences are more similiar.
     - Our closest relative in the animal kingdom is the chimp, whose DNA is 97-99% the same as ours. 
     - But even distantly related animals share some of our DNA.  Mouse DNA is 90% the same as ours, and we even share common DNA with the lowliest of life, the bacterium.